Summary of results for T1D

Chr #	Locus Pos.	Symbol	SNP id	Memphis:1	Memphis:2	Bologna:1	Bologna:2	moult_lab:1		moult_lab:2		Mooney:1		Predictions #	Agree #
1	202.46-202.86	PLEKHA6	rs10900562			0	0.65	0.078353	0.078353			1	0.936	4	2
1	63.68-64.08	PGM1	rs11208257		1	0.4	0.8	0	0	1	1	1	0.624	6	4
1	202.46-202.86	LRRN2	rs11588857			0.15	0.8	0	0					3	1
1	113.53-114.47	HIPK1	rs12568463									1	0.765	1	1
1	202.46-202.86	PPP1R15B	rs2089891			0.1	0.65					1	0.936	3	2
1	204.81-205.21	IL19	rs2243191			0.5	0.7			0	0	1	0.937	4	3
1	113.53-114.47	PTPN22	rs2476601		1	0.35	0.55	0.740901	0.740901					4	3
1	204.81-205.21	PIGR	rs291102			0.05	0.7	0	0			1	0.872	4	2
1	204.81-205.21	IL24	rs3093431			0.35	0.55	0.395777	0.395777			1	0.811	4	2
1	202.46-202.86	PIK3C2B	rs3765156									1	0.319	1	1
1	202.46-202.86	LRRN2	rs3789044			0.15	0.55	0	0			1	0.774	4	2
1	202.46-202.86	MDM4	rs4252741			0.05	0.5	0	0			1	0.915	4	2
1	202.46-202.86	PPP1R15B	rs4492688			0.35	0.65							2	1
1	63.68-64.08	KIAA1799	rs6657480			0	0.6	0	0			1	0.887	4	2
1	63.68-64.08	PGM1	rs855314		1	0.05	0.4	0	0	0	0			5	1
2	74.40-74.80	CCDC142,MRPL53	rs1047911			0.05	0.55	0	0			1	0.877	4	2
2	74.40-74.80	GCS1	rs1063588		1	0.15	0.7	0	0					4	2
2	74.40-74.80	CCDC142	rs13385919			0.1	0.65	0.587252	0.587252			1	0.518	4	3
2	74.40-74.80	LBX2	rs17009998			0.15	0.4	0.359249	0.359249			1	0.584	4	1
2	74.40-74.80	LOXL3	rs17010021			0.2	0.65	0	0					3	1
2	74.40-74.80	DCTN1	rs17721059			0.05	0.35	0	0			1	0.835	4	1
2	204.25-204.65	CTLA4	rs231775			0.1	0.5	0	0			1	0.879	4	2
2	74.40-74.80	LOC130951	rs3025980			0	0.6	0	0			1	0.915	4	2
2	100.00-100.39	LONRF2	rs4851287			0.6	0.65	1	1			1	0.697	4	4
2	74.40-74.80	LBX2	rs6546908									1	0.698	1	1
2	74.40-74.80	CCDC142,TTC31	rs6707475			0	0.7	0	0			1	0.896	4	2
2	24.35-24.74	ITSN2	rs7603997			0	0.55	0	0					3	1
4	123.04-123.75	KIAA1109	rs2306369			0	0.7					1	0.848	3	2
5	35.71-36.11	SPEF2	rs13170082			0.05	0.7					1	0.941	3	2
5	35.71-36.11	SPEF2	rs13170390			0.05	0.7					1	0.925	3	2
5	35.71-36.11	CAPSL	rs1445898		1	0	0.6					1	0.839	4	3
5	35.71-36.11	IL7R	rs6897932		1	0.15	0.55	0	0			1	0.553	5	3
6	30.70-33.71	C6orf10	rs1033500	1		0.2	0.65	0.833705	0.833705			1	0.666	5	4
6	30.70-33.71	LTA	rs1041981			0.25	0.6	0	0			1	0.869	4	2
6	30.70-33.71	CDSN,PSORS1C1	rs1042127		1	0.05	0.5	1	1			1	0.742	5	4
6	30.70-33.71	HLA-DPA1	rs1042178	1		0.1	0.25					1	0.897	4	2
6	30.70-33.71	HLA-DMB	rs1042337			0.25	0.9							2	1
6	30.70-33.71	BAT2	rs1046089		1	0	0.7	1	1			1	0.892	5	4
6	30.70-33.71	SLC39A7	rs1048778			0.05	0.6	0	0			1	0.83	4	2
6	30.70-33.71	MICA	rs1051790	1		0.1	0.8	0.598884	0.598884	0.616243	0.616243	1	0.776	6	5
6	30.70-33.71	MICA	rs1051792	1		0.05	0.7	0.110923	0.110923	0	0	1	0.888	6	3
6	30.70-33.71	MICA	rs1051794	1		0.05	0.3	0.227559	0.227559	0	0	1	0.779	6	2
6	30.70-33.71	BAT3	rs1052486			0	0.35	0	0			1	0.758	4	1
6	30.70-33.71	gene_desert	rs1057141		1	0	0.55					1	0.809	4	3
6	30.70-33.71	TAP1	rs1057149			0	0.35					1	0.479	3	1
6	30.70-33.71	MICA	rs1063635	1		0.25	0.4	0.255651	0.255651	0	0			5	1
6	30.70-33.71	BAT2	rs10885		1	0	0.55					1	0.915	4	3
6	25.75-26.77	BTN2A3	rs10946829			0.05	0.65	0.616806	0.616806					3	2
6	26.86-30.67	TRIM31	rs1116221			0.3	0.55							2	1
6	30.70-33.71	MICA	rs1131896	1		0.4	0.65	1	1	1	1			5	4
6	30.70-33.71	gene_desert	rs1135216		1	0	0.6							3	2
6	26.86-30.67	ZNF389	rs1150674							1	1			1	1
6	30.70-33.71	TNXB	rs1150752		1	0.4	0.5	0.978171	0.978171			1	0.682	5	4
6	30.70-33.71	VARS	rs11531			0.2	0.8	0	0	0	0	1	0.578	5	2
6	30.70-33.71	BAT2	rs11538262			0.15	0.45	1	1			1	0.847	4	2
6	30.70-33.71	BAT2	rs11538263			0	0.65	0.264453	0.264453			1	0.871	4	2
6	30.70-33.71	BAT2	rs11538264			0	0.75	1	1			1	0.875	4	3
6	25.75-26.77	HIST1H2AC	rs11547330					0.896813	0.896813	0.770542	0.770542	1	0.203	3	3
6	30.70-33.71	TAPBP	rs11549919					0.297089	0.297089			1	0.491	2	1
6	30.70-33.71	HLA-DPB1	rs11551421	1		0.25	0.65	0.880644	0.880644					4	3
6	30.70-33.71	NCR3	rs11575840			0.2	0.5	0	0			1	0.808	4	2
6	30.70-33.71	gene_desert	rs11575906	1		0.3	0.55					1	0.889	4	3
6	25.75-26.77	SLC17A1	rs1165196			0.05	0.65	1	1			1	0.826	4	3
6	25.75-26.77	SLC17A4	rs11754288			0.1	0.75	0	0			1	0.69	4	2
6	30.70-33.71	LY6G5B	rs11758242			0.25	0.35	1	1			1	0.77	4	2
6	30.70-33.71	HCG22	rs11758693					0.419749	0.419749					1	0
6	26.86-30.67	POM121L2	rs11965377					0.235239	0.235239					1	0
6	26.86-30.67	ZNF187	rs11965538			0.15	0.45					1	0.36	3	1
6	26.86-30.67	ZNF187	rs11965542			0.35	0.45					1	0.277	3	1
6	26.86-30.67	HIST1H1B	rs11970638			0.05	0.4	0.47676	0.47676			1	0.887	4	1
6	26.86-30.67	NKAPL	rs12000			0.2	0.5					1	0.512	3	2
6	30.70-33.71	...	rs12179536					0	0					1	0
6	26.86-30.67	PGBD1	rs12210601		1			0.969529	0.969529			1	0.592	3	3
6	30.70-33.71	TNXB	rs12211410					0	0			1	0.686	2	1
6	26.86-30.67	TRIM10	rs12212092			0.15	0.8	0	0			1	0.77	4	2
6	26.86-30.67	OR2H2	rs1233387			0.05	0.65	0	0			1	0.805	4	2
6	26.86-30.67	...	rs1233627					0	0					1	0
6	30.70-33.71	C6orf15	rs1265053	1		0	0.45	1	1			1	0.87	5	3
6	30.70-33.71	PSORS1C1,PSORS1C2	rs1265097			0.05	0.75	0	0			1	0.912	4	2
6	30.70-33.71	C6orf10	rs1265754	1		0.2	0.75	0.745288	0.745288			1	0.844	5	4
6	30.70-33.71	SLC44A4	rs12661281	1		0.1	0.6	0	0			1	0.683	5	3
6	30.70-33.71	CCHCR1	rs130067			0.1	0.5	0.044872	0.044872			1	0.769	4	2
6	30.70-33.71	CCHCR1	rs130074			0.2	0.35	1	1			1	0.81	4	2
6	30.70-33.71	CCHCR1	rs130075			0.35	0.4	0	0			1	0.716	4	1
6	30.70-33.71	CCHCR1	rs130076			0.25	0.4	0.092335	0.092335			1	0.728	4	1
6	30.70-33.71	CCHCR1	rs130079			0.05	0.4	1	1			1	0.67	4	2
6	25.75-26.77	BTN2A1	rs13195402			0.6	0.85	1	1			1	0.683	4	4
6	25.75-26.77	BTN2A1	rs13195509			0.15	0.7	0.949428	0.949428			1	0.789	4	3
6	26.86-30.67	ZKSCAN3	rs13201752			0.05	0.25							2	0
6	26.86-30.67	ZKSCAN3	rs13201753			0.05	0.3					1	0.865	3	1
6	30.70-33.71	LOC732041	rs13203895					0.786946	0.786946					1	1
6	25.75-26.77	BTN3A2	rs13216828	1		0.05	0.45	0	0					4	1
6	30.70-33.71	CCHCR1	rs1576			0	0.45	0	0			1	0.864	4	1
6	26.86-30.67	NKAPL	rs1635			0.05	0.7					1	0.842	3	2
6	26.86-30.67	NKAPL	rs1679709			0.05	0.55	0	0			1	0.709	4	2
6	25.75-26.77	HIST1H1A	rs16891235			0	0.4	0	0			1	0.907	4	1
6	26.86-30.67	ZNF187	rs16893892			0.45	0.45					1	0.585	3	1
6	26.86-30.67	PGBD1	rs16893917		1	0.1	0.7					1	0.796	4	3
6	26.86-30.67	C6orf12	rs16896944					0	0					1	0
6	26.86-30.67	POM121L2	rs16897515					1	1					1	1
6	26.86-30.67	MAS1L	rs17184100			0.1	0.45	0	0			1	0.88	4	1
6	26.86-30.67	OR5U1	rs17404424			0.05	0.85	0	0			1	0.818	4	2
6	30.70-33.71	TNXB	rs17421133		1			0.116596	0.116596	0	0	1	0.378	4	2
6	30.70-33.71	HLA-DPA1	rs17509489	1				1	1			1	0.763	3	3
6	30.70-33.71	gene_desert	rs17583782			0.15	0.6							2	1
6	30.70-33.71	gene_desert	rs17617321			0.25	0.4							2	0
6	30.70-33.71	HLA-DMB	rs17617333			0.35	0.5			0.398147	0.398147			3	1
6	30.70-33.71	BRD2	rs176250			0.05	0.75	0	0					3	1
6	26.86-30.67	POM121L2	rs17688097					1	1					1	1
6	26.86-30.67	ZKSCAN3	rs17856167			0.05	0.6	0	0			1	0.821	4	2
6	30.70-33.71	SLC44A4	rs17856465	1		0.05	0.5	0	0			1	0.637	5	3
6	30.70-33.71	TAP2	rs1800454		1	0	0.5	0	0			1	0.443	5	3
6	25.75-26.77	HFE	rs1800562			0.85	0.55	1	1	1	1	1	0.092	5	5
6	30.70-33.71	C6orf26,MSH5	rs1802127			0.05	0.85	0	0			1	0.84	4	2
6	30.70-33.71	MICA	rs1882	1										1	1
6	26.86-30.67	PGBD1	rs1997660		1	0.05	0.7							3	2
6	26.86-30.67	...	rs200484			0	0.8	0	0			1	0.87	4	2
6	30.70-33.71	NOTCH4	rs2022060			0.5	0.25	0.04576	0.04576			1	0.782	4	2
6	30.70-33.71	CCHCR1	rs2027937			0.2	0.55	0	0			1	0.734	4	2
6	30.70-33.71	TNXB	rs204883									1	0.624	1	1
6	25.75-26.77	HIST1H1T	rs2051542			0.15	0.7	1	1			1	0.707	4	3
6	30.70-33.71	HLA-DOB	rs2070121			0.35	0.55	0	0			1	0.89	4	2
6	30.70-33.71	AGER,PBX2	rs2070600			0.2	0.55	0.924663	0.924663			1	0.681	4	3
6	30.70-33.71	NOTCH4	rs2071282			0.75	0.6	0.834762	0.834762			1	0.539	4	4
6	30.70-33.71	PSMB8,TAP1	rs2071543			0.1	0.6	0	0			1	0.649	4	2
6	30.70-33.71	HLA-DOB	rs2071554			0.1	0.6					1	0.772	3	2
6	30.70-33.71	HLA-DQA2	rs2071800	1		0.2	0.4	0	0			1	0.826	5	2
6	30.70-33.71	TAPBP	rs2071888			0.05	0.5	0.564837	0.564837			1	0.631	4	3
6	26.86-30.67	OR12D2	rs2073151		1	0.05	0.55	0	0					4	2
6	26.86-30.67	OR10C1	rs2074466	1		0.05	0.65	0.632718	0.632718			1	0.509	5	4
6	26.86-30.67	OR10C1	rs2074468	1		0.05	0.7	0	0					4	2
6	26.86-30.67	OR10C1	rs2074469			0.2	0.8	1	1					3	2
6	26.86-30.67	RNF39	rs2074479	1		0.1	0.65	0	0			1	0.879	5	3
6	30.70-33.71	MDC1	rs2075015			0.2	0.55	1	1					3	2
6	30.70-33.71	MSH5	rs2075789			0.05	0.45	0.19802	0.19802					3	0
6	30.70-33.71	BTNL2	rs2076523			0.05	0.2	0	0					3	0
6	30.70-33.71	BTNL2	rs2076530			0.05	0.8							2	1
6	30.70-33.71	FLJ43752	rs210162			0	0.7							2	1
6	30.70-33.71	TAP1	rs2127679		1	0	0.6					1	0.737	4	3
6	26.86-30.67	ZKSCAN3	rs213227			0.1	0.35	0	0			1	0.791	4	1
6	25.75-26.77	HIST1H2BI,HIST1H3G	rs2223591									1	0.258	1	1
6	30.70-33.71	HSPA1L	rs2227955		1	0.05	0.6	0	0	0	0	1	0.738	6	3
6	30.70-33.71	gene_desert	rs2228396		1	0.1	0.65					1	0.315	4	3
6	30.70-33.71	LTA	rs2229092	1		0.3	0.55	0	0			1	0.829	5	3
6	30.70-33.71	LTA	rs2229094	1		0.45	0.45	0	0			1	0.778	5	2
6	30.70-33.71	LTB	rs2229699			0.1	0.75	0	0			1	0.809	4	2
6	30.70-33.71	COL11A2	rs2229784			0.05	0.5	0.726663	0.726663			1	0.741	4	3
6	30.70-33.71	COL11A2	rs2229792			0.1	0.5	1	1			1	0.683	4	3
6	25.75-26.77	HIST1H1C	rs2230653			0.05	0.5	0.616873	0.616873			1	0.963	4	3
6	26.86-30.67	ZSCAN12	rs2232430					0	0					1	0
6	26.86-30.67	ZSCAN12	rs2232432					1	1	1	1			2	2
6	26.86-30.67	ZSCAN12	rs2232434					1	1					1	1
6	30.70-33.71	PSORS1C1,PSORS1C2	rs2233950			0	0.5	0	0			1	0.919	4	2
6	30.70-33.71	C6orf15	rs2233974	1		0.15	0.75	0.047201	0.047201			1	0.923	5	3
6	30.70-33.71	C6orf15	rs2233977	1		0	0.9	0	0			1	0.949	5	3
6	30.70-33.71	C6orf15	rs2233982	1		0.2	0.45	1	1			1	0.811	5	3
6	26.86-30.67	POM121L2	rs2235233					0	0					1	0
6	30.70-33.71	C6orf21	rs2242653			0.05	0.6	0	0			1	0.891	4	2
6	30.70-33.71	C6orf47	rs2242655	1		0.05	0.45	0	0			1	0.856	5	2
6	30.70-33.71	SLC44A4	rs2242665	1		0	0.7	0	0			1	0.656	5	3
6	30.70-33.71	HCP5	rs2255221		1	0.1	0.55							3	2
6	30.70-33.71	BAT1,MCCD1	rs2259435	1		0.15	0.6	0	0					4	2
6	30.70-33.71	C6orf15	rs2270191	1		0	0.55	0	0			1	0.929	5	3
6	30.70-33.71	BAT2	rs2280801			0.05	0.55	1	1			1	0.749	4	3
6	25.75-26.77	HIST1H1E,HIST1H2BD	rs2298090			0	0.4	0	0			1	0.882	4	1
6	26.86-30.67	RNF39	rs2301753			0.1	0.35					1	0.871	3	1
6	30.70-33.71	HCP5	rs2395029			0.1	0.75							2	1
6	30.70-33.71	PSMB9	rs241419			0.15	0.7	1	1					3	2
6	30.70-33.71	C6orf205	rs2429292					0.176005	0.176005			1	0.814	2	1
6	30.70-33.71	LOC642038	rs2507984					0	0					1	0
6	26.86-30.67	TRIM15	rs2523732		1			0	0					2	1
6	26.86-30.67	TRIM31	rs2523989			0	0.7	0	0			1	0.87	4	2
6	30.70-33.71	LOC732041	rs2524073					0	0					1	0
6	26.86-30.67	ZFP57	rs2535241			0.3	0.6					1	0.594	3	2
6	30.70-33.71	LOC730410	rs2596574							1	1			1	1
6	30.70-33.71	BAT2	rs2736158			0	0.45	0	0			1	0.822	4	1
6	30.70-33.71	AIF1	rs2736182			0.45	0.4	0.851941	0.851941					3	1
6	30.70-33.71	BTNL2	rs28362680			0	0.7	0	0			1	0.411	4	2
6	30.70-33.71	MSH5	rs28381349			0	0.8	0	0			1	0.726	4	2
6	30.70-33.71	MSH5	rs28381359			0.15	0.85	0	0			1	0.762	4	2
6	30.70-33.71	MSH5	rs28399977			0.1	0.7	0	0			1	0.551	4	2
6	30.70-33.71	C6orf26	rs28399989		1			0.885852	0.885852					2	2
6	30.70-33.71	C6orf27	rs28399998		1			0	0					2	1
6	30.70-33.71	C6orf27	rs28400002		1	0.45	0.6	1	1			1	0.7	5	4
6	30.70-33.71	TNXB	rs2856447					0	0			1	0.723	2	1
6	25.75-26.77	BTN2A3	rs2893848			0.1	0.55	0	0	0.119306	0.119306			4	1
6	30.70-33.71	MDC1	rs28986465			0.05	0.75	0	0			1	0.864	4	2
6	30.70-33.71	HLA-DPB1	rs3097675	1		0.25	0.65	0.959664	0.959664			1	0.832	5	4
6	26.86-30.67	OR2J2	rs3116856			0.05	0.5	0	0			1	0.425	4	2
6	26.86-30.67	...	rs3117328					0	0					1	0
6	30.70-33.71	ZBTB22	rs3130100			0	0.65	0	0					3	1
6	30.70-33.71	LOC642076,MYL8P	rs3130267					0	0					1	0
6	30.70-33.71	BAT4,CSNK2B	rs3130618		1	0.35	0.5	1	1			1	0.821	5	4
6	26.86-30.67	OR2J3	rs3130764			0	0.8	0	0			1	0.388	4	2
6	26.86-30.67	...	rs3130827					0	0					1	0
6	26.86-30.67	LOC646260	rs3131085					0.721274	0.721274					1	1
6	30.70-33.71	SFTPG	rs3131787			0.25	0.5	0.242409	0.242409			1	0.939	4	2
6	30.70-33.71	CDSN,PSORS1C1	rs3132554		1	0.1	0.4	0	0			1	0.72	5	2
6	30.70-33.71	DPCR1	rs3132580	1		0.05	0.75							3	2
6	30.70-33.71	NOTCH4	rs3134934					0	0			1	0.531	2	1
6	30.70-33.71	LST1,NCR3	rs3179003			0.5	0.75	0	0			1	0.853	4	3
6	30.70-33.71	GTF2H4,VARS2	rs3218820			0.5	0.5	1	1			1	0.585	4	4
6	30.70-33.71	RGL2	rs34022110			0.05	0.55	1	1			1	0.893	4	3
6	30.70-33.71	C6orf10	rs34498363	1		0.05	0.8	0.056297	0.056297					4	2
6	26.86-30.67	TRIM31	rs34704616					1	1					1	1
6	30.70-33.71	RGL2	rs35273540			0.05	0.5	0	0			1	0.829	4	2
6	30.70-33.71	DHX16	rs35836922					0	0					1	0
6	25.75-26.77	BTN2A1	rs3734539			0.35	0.5	0	0	0.484748	0.484748	1	0.699	5	2
6	25.75-26.77	BTN2A1	rs3734542			0.05	0.65	0	0	0	0	1	0.818	5	2
6	26.86-30.67	TRIM31	rs3734838			0.25	0.7	0.396781	0.396781					3	1
6	25.75-26.77	BTN1A1	rs3736781			0.05	0.8	0	0			1	0.621	4	2
6	30.70-33.71	LY6G6D	rs3749952			0.2	0.7	0.947496	0.947496			1	0.888	4	3
6	30.70-33.71	C6orf10	rs3749966	1		0.05	0.8	0	0					4	2
6	26.86-30.67	OR12D3	rs3749971	1		0.2	0.5	0	0			1	0.865	5	3
6	26.86-30.67	OR2J3	rs3749977			0.1	0.6	0	0			1	0.371	4	2
6	26.86-30.67	PGBD1	rs3800324			0.2	0.35	1	1			1	0.757	4	2
6	26.86-30.67	PGBD1	rs3800325			0.15	0.4	0	0			1	0.781	4	1
6	26.86-30.67	PGBD1	rs3800326			0.15	0.75	1	1			1	0.842	4	3
6	30.70-33.71	SKIV2L	rs3911893	1		0.05	0.7	0	0					4	2
6	30.70-33.71	BRD2	rs3918143			0	0.5					1	0.914	3	2
6	26.86-30.67	GPX6	rs406113			0	0.5					1	0.582	3	2
6	30.70-33.71	TAP2	rs4148876			0.2	0.35					1	0.351	3	1
6	30.70-33.71	CFB	rs4151651			0.05	0.6	0	0			1	0.86	4	2
6	30.70-33.71	CFB	rs4151667			0.4	0.8							2	1
6	30.70-33.71	SKIV2L	rs437179	1		0.05	0.45	0	0					4	1
6	30.70-33.71	TNF	rs4645843			0.75	0.55	0	0			1	0.867	4	3
6	30.70-33.71	VARS2	rs4678		1	0	0.45	0	0			1	0.773	5	2
6	25.75-26.77	BTN3A1	rs4712990			0.05	0.9	1	1	0.919837	0.919837	1	0.762	5	4
6	30.70-33.71	CDSN,PSORS1C1	rs4713436									1	0.639	1	1
6	30.70-33.71	BAK1	rs4987115			0.35	0.6	0	0	1	1	1	0.93	5	3
6	30.70-33.71	NOTCH4	rs520692			0.8	0.55	0	0			1	0.481	4	3
6	30.70-33.71	C6orf10	rs560505	1		0.4	0.4	1	1			1	0.613	5	3
6	30.70-33.71	SLC44A4	rs644827	1		0.05	0.4	0	0			1	0.422	5	2
6	26.86-30.67	POM121L2	rs6456773					0	0					1	0
6	26.86-30.67	PGBD1	rs6456811		1	0.05	0.5					1	0.932	4	3
6	30.70-33.71	CYP21A2	rs6474					0	0			1	0.604	2	1
6	30.70-33.71	C6orf26,C6orf27	rs6905572		1	0	0.55	0	0			1	0.715	5	3
6	30.70-33.71	LOC732041	rs6919409					0	0					1	0
6	30.70-33.71	VARS2	rs6926224			0.15	0.35					1	0.92	3	1
6	30.70-33.71	gene_desert	rs6926628			0.2	0.6					1	0.32	3	2
6	30.70-33.71	VARS2	rs6926723			0	0.45					1	0.87	3	1
6	26.86-30.67	OR5V1	rs6930033	1		0.2	0.55	0	0			1	0.757	5	3
6	30.70-33.71	HLA-DRB1,HLA-DRB4	rs701831					1	1	0.411055	0.411055			2	1
6	30.70-33.71	HLA-DQA1,LOC731682	rs707952	1		0.05	0.85	0	0	0	0	1	0.423	6	3
6	26.86-30.67	ZKSCAN3	rs733743			0.05	0.55					1	0.898	3	2
6	30.70-33.71	CDSN,PSORS1C1	rs7742033			0.4	0.8	1	1					3	2
6	25.75-26.77	BTN2A3	rs7745238			0.05	0.5	0	0	1	1			4	2
6	30.70-33.71	TCF19	rs7750641			0.1	0.75	0	0			1	0.905	4	2
6	26.86-30.67	OR2B6	rs7767176			0.15	0.75	0	0			1	0.858	4	2
6	30.70-33.71	C6orf10	rs7775397	1		0.05	0.4	1	1					4	2
6	30.70-33.71	LY6G5B	rs805267			0.3	0.5	0	0					3	1
6	30.70-33.71	C6orf21	rs805295			0.1	0.75	1	1					3	2
6	30.70-33.71	NOTCH4	rs8192585			0.4	0.4	0	0			1	0.696	4	1
6	26.86-30.67	ZNF323	rs853684			0.05	0.3	1	1	0.185096	0.185096	1	0.863	5	2
6	30.70-33.71	NOTCH4	rs915894		1	0.45	0.3	0.942909	0.942909					4	2
6	26.86-30.67	OR5U1	rs9257694			0.05	0.75	0.92545	0.92545			1	0.787	4	3
6	26.86-30.67	OR12D2	rs9257834		1	0.2	0.85	1	1			1	0.76	5	4
6	26.86-30.67	OR11A1	rs9257857			0.05	0.6	0	0			1	0.531	4	2
6	26.86-30.67	LOC730398	rs9260966					0.711372	0.711372					1	1
6	30.70-33.71	KIAA1949	rs9262143			0.15	0.4	0	0					3	0
6	30.70-33.71	HCG22	rs9262630					1	1					1	1
6	30.70-33.71	LOC730410	rs9266379							0	0			1	0
6	30.70-33.71	MICA	rs9266825	1								1	0.91	2	2
6	30.70-33.71	LY6G5B	rs9267532		1	0.4	0.45	0	0			1	0.784	5	2
6	30.70-33.71	C6orf21	rs9267547			0.05	0.45	0	0			1	0.892	4	1
6	30.70-33.71	NOTCH4	rs9267835					1	1			1	0.031	2	2
6	30.70-33.71	C6orf10	rs9268368	1		0.2	0.65	0.038293	0.038293					4	2
6	30.70-33.71	C6orf10	rs9268384	1		0.2	0.65	0	0					4	2
6	30.70-33.71	BTNL2	rs9268480									1	0.62	1	1
6	30.70-33.71	C2	rs9332739			0.05	0.65	0	0	0	0			4	1
6	26.86-30.67	OR2B2	rs9368537			0.05	0.65	0	0					3	1
6	26.86-30.67	OR2B6	rs9380030			0.05	0.5	0	0			1	0.85	4	2
6	26.86-30.67	OR12D3	rs9380122	1		0.4	0.7	1	1					4	3
6	30.70-33.71	MICA	rs9380254	1		0.6	0.55	1	1	1	1	1	0.705	6	6
6	30.70-33.71	C6orf10	rs9405090	1		0.05	0.5	0	0					4	2
6	26.86-30.67	NKAPL	rs9461446			0	0.5	0.487982	0.487982			1	0.799	4	2
6	30.70-33.71	MDC1	rs9461623			0	0.55	0.03532	0.03532					3	1
6	30.70-33.71	BTNL2	rs9461742			0.05	0.7	0	0					3	1
6	30.70-33.71	C6orf27,VARS	rs9469052		1			0	0			1	0.212	3	2
6	30.70-33.71	HLA-DMA	rs9469319			0.3	0.6	0.056671	0.056671					3	1
6	30.70-33.71	PSORS1C1,PSORS1C2	rs9501057			0.05	0.65	0	0			1	0.865	4	2
7	50.80-51.16	COBL	rs10230120			0	0.4					1	0.918	3	1
7	50.80-51.16	COBL	rs2240090			0	0.75							2	1
10	5.94-6.71	ANKRD16	rs1052420			0.05	0.25	0	0			1	0.575	4	1
10	33.26-33.66	NRP1	rs2228638			0.2	0.55	0	0			1	0.393	4	2
10	5.94-6.71	PRKCQ	rs2236379			0.1	0.55	0	0			1	0.867	4	2
12	54.47-54.97	LOC732415,MMP19	rs1056784			0.1	0.9	0	0	0.134813	0.134813			4	1
12	109.65-109.89	PPP1CC	rs11558237			0.9	0.85	1	1	1	1	1	0.71	5	5
12	109.65-109.89	CCDC63	rs12371434			0.05	0.65	0	0			1	0.89	4	2
12	54.47-54.97	MMP19	rs17844794			0.4	0.65	1	1			1	0.764	4	3
12	54.47-54.97	SILV	rs2071024			0.35	0.6	1	1			1	0.899	4	3
12	54.47-54.97	ERBB3	rs2271188			0.25	0.65	0	0			1	0.661	4	2
12	54.47-54.97	LOC732415,MMP19	rs2291267					1	1					1	1
12	110.31-110.92	SH2B3	rs3184504		1	0.1	0.75	0.043863	0.043863			1	0.792	5	3
12	110.31-110.92	ACAD10	rs34245489			0.2	0.55	0.683653	0.683653			1	0.837	4	3
12	54.47-54.97	FAM62A	rs35075600			0.15	0.4					1	0.656	3	1
12	54.47-54.97	ERBB3	rs35961836			0.85	0.5	1	1	0	0	1	0.563	5	4
12	9.56-10.00	CLEC2A	rs526680			0.1	0.4	0.392761	0.392761					3	0
12	54.47-54.97	ERBB3	rs773123			0.1	0.5	0	0					3	1
15	76.83-77.22	ADAMTS7	rs3825807			0.1	0.4	0	0					3	0
16	20.05-20.44	ACSM2A	rs1133607			0.15	0.55	0.285533	0.285533	0	0			4	1
16	10.90-11.45	LOC388210	rs11860634					0	0					1	0
16	10.90-11.45	LOC400499	rs12933868			0.05	0.65	0	0					3	1
16	10.90-11.45	LOC400499	rs4238608			0.1	0.45	0	0					3	0
16	10.90-11.45	PRM3	rs429744			0	0.4	0.321196	0.321196			1	0.893	4	1
16	10.90-11.45	LOC388210	rs4381620					0	0					1	0
16	10.90-11.45	CIITA	rs7197779	1		0.05	0.25	0	0			1	0.635	5	2
16	10.90-11.45	CIITA	rs8046121	1		0.2	0.7	0	0			1	0.819	5	3
16	10.90-11.45	LOC388210	rs8058507					0	0					1	0
17	7.38-7.77	TP53	rs1042522			1	0.4	0	0			1	0.883	4	2
17	7.38-7.77	TP53	rs11540654			1	0.6	0.489912	0.489912	1	1	1	0.83	5	4
17	7.38-7.77	DNAH2	rs11656500			0.1	0.85	0	0			1	0.543	4	2
17	7.38-7.77	DNAH2	rs11868946			0.05	0.65	0	0			1	0.666	4	2
17	7.38-7.77	SAT2	rs13894			0.25	0.5	1	1	1	1	1	0.648	5	4
17	7.38-7.77	CD68	rs17607			0.25	0.55	0	0			1	0.585	4	2
17	7.38-7.77	WDR79	rs17880282			0.05	0.75	0.013884	0.013884					3	1
17	7.38-7.77	TP53	rs17882252			1	0.6	1	1			1	0.324	4	4
17	7.38-7.77	EFNB3,WDR79	rs1861948					0	0			1	0.766	2	1
17	7.38-7.77	WDR79	rs2287499			0.05	0.8	0	0			1	0.888	4	2
17	35.83-36.22	KRT27	rs2469826			0	0.4	0	0			1	0.743	4	1
17	7.38-7.77	...	rs3803800			0.1	0.45	0	0			1	0.942	4	1
17	35.83-36.22	KRT28	rs4624233			0	0.45	0	0			1	0.715	4	1
17	7.38-7.77	SHBG	rs6258			0.3	0.45	1	1	0.04455	0.04455			4	1
17	7.38-7.77	EFNB3,WDR79	rs7640			0	0.5	0	0			1	0.751	4	2
17	7.38-7.77	CYB5D1,LSMD1	rs8522									1	0.511	1	1
17	7.38-7.77	CHD3	rs931543			0.15	0.65					1	0.907	3	2
17	35.83-36.22	KRT27	rs981684			0.05	0.8	0.015737	0.015737			1	0.61	4	2
17	7.38-7.77	CD68	rs9901675			0.1	0.65	0	0			1	0.598	4	2
20	36.23-36.63	RP5-1054A22.3	rs1205434			0.05	0.4	0.363268	0.363268			1	0.855	4	1
20	36.23-36.63	BPI	rs1341023			0.1	0.45					1	0.85	3	1
20	1.36-1.76	SIRPB1	rs1535882			0.1	0.6	0	0					3	1
20	36.23-36.63	RP5-1054A22.3	rs16987188			0	0.75	0	0			1	0.513	4	2
20	1.36-1.76	SIRPB1	rs16995332									1	0.456	1	1
20	36.23-36.63	LBP	rs2232580			0.15	0.5	0	0			1	0.812	4	2
20	36.23-36.63	LBP	rs2232583			0.05	0.7	0	0	0	0	1	0.822	5	2
20	36.23-36.63	LBP	rs2232585			0.1	0.65	0	0	0	0	1	0.814	5	2
20	36.23-36.63	LBP	rs2232613		1	0.4	0.6	1	1	0.323617	0.323617	1	0.512	6	4
20	36.23-36.63	LBP	rs2232618			0.1	0.75	0	0	1	1	1	0.661	5	3
20	36.23-36.63	LBP	rs2232619			0.1	0.9	0.600699	0.600699	0	0	1	0.818	5	3
20	1.36-1.76	SIRPB1	rs2243603			0	0.55	0	0			1	0.662	4	2
20	1.36-1.76	SIRPD	rs2249317			0.05	0.55	0.842504	0.842504	1	1			4	3
20	1.36-1.76	SIRPB1	rs2253427			0.15	0.75	1	1			1	0.333	4	3
20	36.23-36.63	RP5-1054A22.3	rs3746471			0.05	0.45	0	0					3	0
20	36.23-36.63	BPI	rs4358188			0	0.85	0	0	0.159746	0.159746	1	0.79	5	2
20	36.23-36.63	BPI	rs5741804			0.1	0.7	0.699012	0.699012	0.283225	0.283225	1	0.755	5	3
20	36.23-36.63	BPI	rs5741809			0.1	0.45	0	0	0.057292	0.057292	1	0.784	5	1
20	36.23-36.63	BPI	rs5743497			0.05	0.55					1	0.838	3	2
20	36.23-36.63	BPI	rs5743509		1	0.05	0.7	0	0	0	0	1	0.668	6	3
20	36.23-36.63	BPI	rs5743523					1	1	0.712384	0.712384	1	0.23	3	3
20	36.23-36.63	BPI	rs5743524			0	0.8	0.345646	0.345646	0	0	1	0.622	5	2
20	36.23-36.63	LBP	rs5744212			0.15	0.75	0.975012	0.975012	1	1	1	0.524	5	4
20	1.36-1.76	SIRPG	rs6034239			0	0.5	0	0			1	0.723	4	2
20	1.36-1.76	SIRPB2	rs6042507			0	0.5	0.142834	0.142834	0	0			4	1
20	1.36-1.76	NSFL1C	rs9575			0.05	0.45	1	1			1	0.71	4	2
21	42.51-42.90	UBASH3A	rs13048049			0.3	0.5	0	0			1	0.751	4	2
21	42.51-42.90	UBASH3A	rs17114930			0	0.45	0	0	1	1	1	0.749	5	2
21	42.51-42.90	UBASH3A	rs2277800			0.1	0.7	1	1			1	0.629	4	3
21	42.51-42.90	SLC37A1	rs228104			0.05	0.55	0	0					3	1
21	42.51-42.90	TMPRSS3	rs2839500			0.15	0.65	0.349263	0.349263	1	1			4	2
21	42.51-42.90	TFF2	rs7277409			0.1	0.3					1	0.872	3	1
21	42.51-42.90	TMPRSS3	rs928302			0.2	0.45	0.909156	0.909156	0	0			4	1
22	35.73-36.12	C1QTNF6	rs17812699			0	0.65	0	0			1	0.538	4	2
22	35.73-36.12	LOC731689,LRRC62	rs2071856									1	0.572	1	1
22	35.73-36.12	LOC731689,LRRC62	rs2071857									1	0.267	1	1
22	35.73-36.12	TMPRSS6	rs2235324			0.15	0.45							2	0
22	35.73-36.12	C1QTNF6	rs229526			0.25	0.5					1	0.374	3	2
22	35.73-36.12	C1QTNF6	rs229527			0	0.4					1	0.733	3	1
22	35.73-36.12	LOC731689,LRRC62	rs7292751									1	0.575	1	1