Summary of results for RA

Chr #Locus Pos.SymbolSNP idMemphis:1 Memphis:2 Bologna:1 Bologna:2 moult_lab:1 moult_lab:2 Mooney:1 Predictions #Agree #
1113.69-114.42DCLRE1Brs120223780010
1113.53-114.47HIPK1rs1256846310.76511
12.33-2.74TNFRSF14rs22341630.500.40.0941780.0941780010.70962
12.33-2.74TNFRSF14rs22341670.50.050.5532
1113.53-114.47PTPN22rs247660110.350.550.7409010.74090143
12.33-2.74PANK4rs753552810.20.510.66443
2204.25-204.65CTLA4rs2317750.10.50010.87942
555.28-55.67IL6STrs106356000.60031
630.68-33.63C6orf10rs100387810.20.60.1534340.15343442
630.70-33.71C6orf10rs103350010.20.650.8337050.83370510.66654
630.70-33.71LTArs10419810.250.60010.86942
630.70-33.71HLA-DPA1rs104217810.10.2510.89742
630.70-33.71HLA-DMBrs10423370.250.921
630.70-33.71SLC39A7rs10487780.050.60010.8342
630.70-33.71MICArs105179210.050.70.1109230.1109230010.88863
630.70-33.71MICArs105179410.050.30.2275590.2275590010.77962
630.70-33.71TAP1rs105714900.3510.47931
630.70-33.71MICArs106363510.250.40.2556510.2556510051
630.68-33.63PSORS1C1rs10636460.050.650.5055380.50553832
630.68-33.63...rs109471210.4971830.49718310
630.70-33.71TNXBrs115075210.40.50.9781710.97817110.68254
630.70-33.71VARSrs1153110.20.8000010.57863
630.70-33.71BAT2rs115382620.150.451110.84742
630.70-33.71BAT2rs1153826300.650.2644530.26445310.87142
630.70-33.71BAT2rs1153826400.751110.87543
630.70-33.71gene_desertrs1157590610.30.5510.88943
630.68-33.63...rs117560380.7828690.78286911
630.70-33.71LY6G5Brs1175824210.250.351110.7753
630.68-33.63DPCR1rs11970154100.750.3863620.38636210.83853
630.68-33.63CFBrs126140.10.4510.73131
630.70-33.71C6orf15rs1265053100.451110.8753
630.68-33.63C6orf15rs1265054100.40.640460.6404610.94753
630.68-33.63PSORS1C1,PSORS1C2rs126509600.650031
630.70-33.71C6orf10rs126575410.20.750.7452880.74528810.84454
630.70-33.71SLC44A4rs1266128110.10.60010.68353
630.68-33.63...rs126657001111
630.70-33.71BRD2rs12822111
630.70-33.71CCHCR1rs1300670.10.50.0448720.04487210.76942
630.68-33.63CCHCR1rs1300720.30.40010.7441
630.70-33.71CCHCR1rs1300740.20.351110.8142
630.70-33.71CCHCR1rs1300750.350.40010.71641
630.68-33.63WDR46rs143980.050.71110.23243
630.68-33.63C6orf205rs163473000.550.4472370.44723710.54342
630.68-33.63TAP2rs168709081110032
630.70-33.71TNXBrs1742113310.1165960.1165960010.37842
630.70-33.71gene_desertrs175837820.150.621
630.70-33.71gene_desertrs176173210.250.420
630.70-33.71HLA-DMBrs176173330.350.50.3981470.39814731
630.70-33.71BRD2rs17625010.050.750042
630.70-33.71SLC44A4rs1785646510.050.50010.63753
630.70-33.71C6orf26,MSH5rs180212710.050.850010.8453
630.70-33.71MICArs1882111
630.70-33.71NOTCH4rs202206010.50.250.045760.0457610.78253
630.70-33.71CCHCR1rs20279370.20.550010.73442
630.70-33.71TNXBrs20488310.62411
630.70-33.71HLA-DOBrs20701210.350.550010.8942
630.70-33.71AGER,PBX2rs20706000.20.550.9246630.92466310.68143
630.70-33.71NOTCH4rs207128210.750.60.8347620.83476210.53955
630.68-33.63AGPAT1,EGFL8rs20712890.30.70010.8442
630.70-33.71PSMB8,TAP1rs20715430.10.60010.64942
630.70-33.71HLA-DOBrs20715540.10.610.77232
630.70-33.71HLA-DQA2rs207180010.20.40010.82652
630.68-33.63TCF19rs207372410.050.60010.84853
630.68-33.63VARS2rs20745060.050.650031
630.70-33.71MDC1rs20750150.20.551132
630.68-33.63EHMT2,SLC44A4rs207579810.150.5510.83943
630.68-33.63HSPA1Lrs207580010.30.650.27390.27390.293170.2931710.78563
629.62-30.68UBDrs20764850.350.91110.68943
630.70-33.71BTNL2rs20765230.050.20030
630.70-33.71BTNL2rs20765300.050.821
630.70-33.71TAP1rs2127679100.610.73743
630.70-33.71gene_desertrs222839610.10.6510.31543
630.68-33.63TAP2rs22283970.2046210.20462110
630.70-33.71LTArs22290920.30.550010.82942
630.70-33.71LTArs22290940.450.450010.77841
630.70-33.71LTBrs22296990.50.10.750010.80953
6137.76-138.44TNFAIP3rs22309260.350.70010.76642
630.70-33.71PSORS1C1,PSORS1C2rs223395000.50010.91942
630.68-33.63PSORS1C1,PSORS1C2rs223395200.51110.78543
630.68-33.63C6orf15rs223397610.150.51110.79554
630.70-33.71C6orf15rs2233977100.90010.94953
630.68-33.63C6orf15rs223398410.40.60010.83453
630.68-33.63DPCR1rs224080410.10.5532
630.70-33.71C6orf15rs2270191100.550010.92953
626.86-30.67RNF39rs23017530.10.3510.87131
630.70-33.71HCP5rs23950290.10.7521
630.70-33.71PSMB9rs24141910.150.71143
630.68-33.63TAP2rs2414470.250.5510.33832
630.70-33.71C6orf205rs24292920.1760050.17600510.81421
630.70-33.71LOC642038rs25079840010
626.86-30.67TRIM15rs252373210021
626.86-30.67TRIM31rs252398900.70010.8742
630.70-33.71LOC732041rs25240730010
630.68-33.63VARSrs260701510.050.60010.77653
630.68-33.63gene_desertrs262133000.710.84932
630.70-33.71BAT2rs273615800.450010.82241
630.70-33.71AIF1rs273618210.450.40.8519410.85194142
630.70-33.71BTNL2rs2836268000.70010.41142
630.70-33.71MSH5rs2838134900.80010.72642
630.70-33.71MSH5rs283813590.150.850010.76242
630.70-33.71MSH5rs2839997710.10.70010.55153
630.70-33.71C6orf26rs2839998910.8858520.88585222
630.70-33.71C6orf27rs2839999810021
630.70-33.71TNXBrs285644710010.72332
629.62-30.68MOGrs28577660.30.551110.46843
630.70-33.71MDC1rs289864650.050.750010.86442
630.68-33.63IER3rs309412410.150.71110.65354
630.68-33.63PHF1rs311671300.70010.85542
630.68-33.63PFDN6,WDR46rs313025700.6521
630.68-33.63CCHCR1rs3130453111
630.70-33.71NOTCH4rs313493410010.53132
630.70-33.71LST1,NCR3rs31790030.50.750010.85343
630.70-33.71GTF2H4,VARS2rs32188200.50.51110.58544
630.70-33.71C6orf10rs3449836310.050.80.0562970.05629742
626.86-30.67TRIM31rs347046161111
630.70-33.71RGL2rs352735400.050.50010.82942
626.86-30.67TRIM31rs37348380.250.70.3967810.39678131
630.70-33.71LY6G6Drs374995210.20.70.9474960.94749610.88854
630.70-33.71C6orf10rs374996610.050.80042
630.70-33.71SKIV2Lrs391189310.050.70042
630.70-33.71BRD2rs3918143100.510.91443
630.70-33.71TAP2rs41488760.20.3510.35131
630.70-33.71CFBrs41516670.40.821
630.70-33.71TNFrs46458430.750.550010.86743
630.70-33.71C6orf10rs56050510.40.41110.61353
630.70-33.71CYP21A2rs64740010.60421
630.70-33.71LOC732041rs69194090010
630.70-33.71gene_desertrs69266280.20.610.3232
629.62-30.68RPP21rs698600.40010.84641
630.68-33.63CDSN,PSORS1C1rs7079130.10.50010.74742
630.70-33.71HLA-DQA1,LOC731682rs70795210.050.85000010.42363
629.62-30.68TRIM40rs7572590.150.550010.62142
629.62-30.68TRIM40rs75726210010.70732
630.70-33.71CDSN,PSORS1C1rs77420330.40.81132
630.70-33.71C6orf10rs777539710.050.41142
630.68-33.63EHMT2rs788710.150.70010.91853
630.70-33.71LY6G5Brs80526710.30.50042
630.70-33.71C6orf21rs8052950.10.751132
630.70-33.71NOTCH4rs819258510.40.40010.69652
630.70-33.71NOTCH4rs91589410.450.30.9429090.94290942
626.86-30.67LOC730398rs92609660.7113720.71137211
630.68-33.63DHX16rs92621380.150.70010.80942
630.70-33.71KIAA1949rs92621430.150.40030
630.68-33.63MDC1rs92621520.050.750010.88442
630.68-33.63...rs92625491111
630.70-33.71HCG22rs92626301111
630.68-33.63PSORS1C1,PSORS1C2rs92637260.050.750010.89642
630.70-33.71MICArs9266825110.9122
630.70-33.71LY6G5Brs926753210.40.450010.78452
630.70-33.71C6orf21rs92675470.050.450010.89241
630.70-33.71NOTCH4rs926783511110.03133
630.70-33.71C6orf10rs926836810.20.650.0382930.03829342
630.70-33.71C6orf10rs926838410.20.650042
630.70-33.71BTNL2rs926848010.6211
630.68-33.63COL11A2rs927793410.450.7532
630.68-33.63LYPLA2P1rs9278021000.6515730.65157321
629.62-30.68TRIM15rs92915610.10.650010.86853
630.70-33.71C2rs93327390.050.65000041
630.70-33.71C6orf10rs940509010.050.50042
630.70-33.71MDC1rs946162300.550.035320.0353231
630.70-33.71BTNL2rs94617420.050.70031
630.70-33.71C6orf27,VARSrs946905210010.21232
630.70-33.71PSORS1C1,PSORS1C2rs95010570.050.650010.86542
629.62-30.68RPP21rs97496300.521
791.89-92.26GATAD1rs347684131111
791.89-92.26PEX1rs45591730.750.60.8777290.87772910.54544
934.52-34.90IL11RArs115755890.500.650010.72153
934.52-34.90ARID3Crs38088690.050.70010.91942
105.94-6.71ANKRD16rs10524200.050.250010.57541
105.94-6.62ANKRD16rs22961360.150.85000010.14252
1256.05-56.45GEFTrs156437400.30.0785230.07852310.61241
1256.05-56.45B4GALNT1,SLC26A10rs77489410.61311
1256.05-56.45B4GALNT1,SLC26A10rs77489500.6510.832
1256.05-56.45B4GALNT1rs8102050.20.350030
1256.05-56.45SLC26A10rs92382800.70.0685660.06856631
1735.11-35.49ZPBP2rs115574670.20.60.5456220.54562210.75443
1735.11-35.49ERBB2rs18012000.0709320.07093210
1735.11-35.49GSDMLrs23054790.20.41110.43442
1735.11-35.49GSDMLrs23054800.10.81110.23743
1735.11-35.49GSDM1rs721293800.551110.3743
2043.99-44.38SLC12A5rs169854420.350.850010.60542
2043.99-44.38MMP9rs1757600.45000010.73251
2043.99-44.38MMP9rs18050880.10.550010.73442
2043.99-44.38MMP9rs22508890.050.650.6391930.6391930.0636140.06361410.74753
2043.99-44.38MMP9rs2274756001121
2043.99-44.38ZNF335rs603260600.450010.88841
2142.51-42.90UBASH3Ars1711493000.45001110.74952
2142.51-42.90UBASH3Ars22778000.10.71110.62943
2142.51-42.90SLC37A1rs2281040.050.550031
2142.51-42.90TMPRSS3rs28395000.150.650.3492630.3492631142
2142.51-42.90TFF2rs72774090.10.310.87231
2142.51-42.90TMPRSS3rs9283020.20.450.9091560.9091560041
2235.73-36.12C1QTNF6rs1781269900.650010.53842
2235.73-36.12TMPRSS6rs22353240.150.4520
2235.69-36.08IL2RBrs2289420.050.50010.85242
2235.73-36.12C1QTNF6rs2295260.250.510.37432
2235.73-36.12C1QTNF6rs22952700.410.73331
2235.69-36.08TMPRSS6rs8557910.10.9000010.72252
2235.69-36.08C22orf33rs96106240.7780190.77801910.73122