Health Sciences Publications of Kenneth Paul Baclawski

  1. K. Baclawski, R. Futrelle, N. Fridman and M. Pescitelli. Database techniques for biological materials & methods. In First Int. Conf. Intell. Sys. Molecular Biology, pages 21-28. (1993) [pdf]
  2. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques. In Proc. Sympos. Adv. Data Management for the Scientist and Engineer, pages 23-28. (1993) [pdf]
  3. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. Northeastern University, College of Computer Science. (1993)
  4. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques. Northeastern University. (1993)
  5. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. Northeastern University. (1993)
  6. K. Baclawski and N. Fridman. M&M-Query: Database support for the annotation and retrieval of biological research articles. Northeastern University, College of Computer Science. (1994) [pdf]
  7. C. Hafner, K. Baclawski, R. Futrelle, N. Fridman and S. Sampath. Creating a Knowledge Base of Biological Research Papers. In Proc. Second Int. Conf. Intell. Sys. Molecular Biology, pages 147-155. (1994) [pdf]
  8. K. Baclawski. Scientific Databases Project Final Report. Northeastern University. (1997)
  9. K. Baclawski, J. Cigna, M.M. Kokar, P. Mager and B. Indurkhya. Knowledge Representation and Indexing Using the Unified Medical Language System. In Pacific Symposium on Biocomputing, pages 490-501. (2000) [pdf] [ppt]
  10. K. Baclawski, T. Niu and E. Neumann. Using DAML format for representing complex gene networks: implications in novel drug discovery. Amer. J. Human Genetics 69 (Suppl)(4):457. Presented at the 51st Annual Meeting of the Amer. Soc. Human Genetics in San Diego, CA on October 12-16, 2001. (2001) [ppt]
  11. K. Baclawski, T. Niu and E. Neumann. PathML: An ontology for biochemical pathways. In ISMB Workshop. (2001) [ppt]
  12. T. Niu, K. Baclawski, S. Huang and J. Letkowski. MotifML: A Novel Ontology-based Language for Protein-Binding Motifs: Implications in Dissecting the Genetic Regulatory Circuitry. Harvard University, Division of Preventive Medicine. (2003) [pdf] [ppt]
  13. T. Niu, K. Baclawski, Y. Feng and H. Wang. Database Schema for Management and Storage of Single Nucleotide Polymorphism. Am. J. Human Genetics 73 (Suppl):A467. (2003)
  14. K. Baclawski. Web Technologies for Bioinformatics. Division of Preventive Medicine, Brigham and Women's Hospital, Harvard Medical School. Invited presentation. (October, 2003) [ppt] [links]
  15. K. Baclawski. Mining the Biomedical Research Literature. Department of Statistics, Harvard University. Invited presentation. (November, 2003) [ppt] [links]
  16. T. Niu, K. Baclawski, Y. Feng and H. Wang. Ontology and database for Single Nucleotide Polymorphism. Harvard University. (2003)
  17. K. Baclawski and T. Niu. Genepack distributed bioinformatics system. Harvard Medical School. (2003)
  18. K. Baclawski and T. Niu. Ontologies for Bioinformatics. MIT Press. ISBN-10 0-262-02591-4, ISBN-13 9780262025911. (October, 2005)
  19. K. Baclawski. Probabilistic foundations of meta-analysis. Talk at the Harvard School of Public Health. (March 4, 2005) [ppt] [links]
  20. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. CSB2005 Tutorial. (August 8, 2005) [ppt] [links]
  21. K. Baclawski. Applications of the Semantic Web for the Life Sciences. Talk at SRI. (August 9, 2005)
  22. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Massachusetts Biotech Council Tutorial. (August 23, 2005) [ppt] [links]
  23. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Collaborative Expedition Workshop on Advancing Toward Credible Agreements Around Information Sharing Environments, Governance, and Data Architecture. Keynote address. (December 6, 2005) [ppt] [links]
  24. K. Baclawski. The Bayesian Web: Adding Reasoning with Uncertainty to the Semantic Web. In Bio-IT Conference. (April 4, 2006) [ppt] [links]
  25. K. Baclawski. Some Major Biomedical Challenges. NLM. (2006) [doc]
  26. K. Baclawski. Emerging Semantic Web Applications for the Life Sciences. Massachusetts Biotech Council Tutorial. (June 29, 2006) [ppt] [links]
  27. K. Baclawski and T. Niu. Bioinformatics. Jaico Publishing. ISBN 81-7992-642-7. (2007)
  28. K. Baclawski and N. Sarkar. Enhancing Organism Based Disease Knowledge Via Name Based Taxonomic Intelligence. In An Open Ontology Repository (OOR): Rationale, Expectations and Requirements. Ontolog Forum. Member of the Panel. (March 27, 2008) [ppt] [links]
  29. K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. Talk at MIT. (September 25, 2012)
  30. K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. Talk at University of Toronto. (October 29, 2012)
  31. K. Baclawski. Relationships between the biomedical terminology used by clinicians and medical test measurement results in intensive care units. In Critical Data: Secondary Use of Big Data from Critical Care. Poster presentation. (January 7, 2014) [pdf]
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